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Laboratory of Chromatin Biochemistry
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Publications

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Molecular basis of hUHRF1 allosteric activation for synergistic histone modification binding by PI5P
Year: 2022 DOI:10.1126/sciadv.abl9461
Authors: Mandal P., Eswara K., Yerkesh Z, Kharchenko V, Zandarashvili L, Bensaddek D, Jaremko L, Black B, Fischle W.
NSD2 dimethylation at H3K36 promotes lung adenocarcinoma pathogenesis
Year: 2021 DOI:10.1016/j.molcel.2021.08.034
Authors: Sengupta P, Zeng L, Li Y, Hausmann S, Ghosh D, Yuan G, Nguyen T, Lyu R, Caporicci M, Morales Benitez A, Coles G, Kharchenko V, Czaban I, Azhibek D, Fischle W., Jaremko M, Wistuba I, Sage J, Jaremko L, Li W, Mazur P, Gozani O.
A new approach for quantifying epigenetic landscapes.
Year: 2020 ISSN:0021-9258 DOI:10.1074/jbc.h120.016430
Authors: Fischle W.
Elevated NSD3 histone methylation activity drives squamous cell lung cancer
Year: 2021 ISSN:0028-0836||1476-4687 DOI:10.1038/s41586-020-03170-y
Authors: Yuan G, Flores N, Hausmann S, Lofgren S, Kharchenko V, Angulo-Ibanez M, Sengupta D, Lu X, Czaban I, Azhibek D, Vicent S, Fischle W., Jaremko M, Fang B, Wistuba I, Chua K, Roth J, Minna J, Shao N, Jaremko L, Mazur P, Gozani O.
Analysis of protein-DNA interactions in chromatin by UV induced cross-linking and mass spectrometry.
Year: 2020 ISSN:2041-1723 DOI:10.1038/s41467-020-19047-7
Authors: Stützer A., Welp L, Raabe M, Sachsenberg T, Kappert C, Wulf A, Lau A, David S, Chernev A., Kramer K, Politis A, Kohlbacher O, Fischle W., Urlaub H.
Examining histone modification crosstalk using immobilized libraries established from ligation-ready nucleosomes.
Year: 2020 ISSN:2041-6520||2041-6539 DOI:10.1039/d0sc03407j
Authors: Pelaz D A, Yerkesh Z, Kirchgäßner S, Mahler H, Kharchenko V, Azhibek D, Jaremko M, Mootz H, Jaremko L, Schwarzer D., … Fischle W.
Alternative splicing and allosteric regulation modulate the chromatin binding of UHRF1.
Year: 2020 ISSN:1362-4962 DOI:10.1093/nar/gkaa520
Authors: Tauber M., Kreuz S., Lemak A., Mandal P., Yerkesh Z, Veluchamy A, Al-Gashgari B, Aljahani A, Cortés-Medina L, Azhibek D, Fan L, Ong M., Duan S, Houliston S., Arrowsmith C.H., … Fischle W.
Nuclear localization and phosphorylation modulate pathological effects of alpha-synuclein
Year: 2019 ISSN:0964-6906||1460-2083
Authors: Raquel Pinho, Isabel Paiva, Kristina Gotovac Jerčić, Luis Fonseca-Ornelas, Ellen Gerhardt, Christiane Fahlbusch, Paula Garcia-Esparcia, Cemil Kerimoglu, Maria A S Pavlou, Anna Villar-Piqué, Éva Szegő, Tomás Lopes da Fonseca, Francesca Odoardi, Szabolcs Soeroes, Ana Cristina Rego, Wolfgang Fischle, Jens C Schwamborn, Thomas Meyer, Sebastian Kügler, Isidre Ferrer,, Johannes Attems, André Fischer, Stefan Becker, Markus Zweckstetter, Fran Borovecki, Tiago F Outeiro
Chemistry meets epigenetics: from chromatin tools to small molecules affecting the readout of our genomes.
Year: 2018 ISSN:1367-5931
Authors: Fischle, Wolfgang, Schwarzer, Dirk
Probing Chromatin-modifying Enzymes with Chemical Tools
Year: 2016 ISSN:1554-8929||1554-8937
Authors: Fischle, Wolfgang, Schwarzer, Dirk
Oxidative stress signaling to chromatin in health and disease
Year: 2016
Authors: Kreuz S., Fischle W.
  • DNA methylation
  • RNS
  • ROS
  • Cancer
  • Diabetes
  • Histone acetylation
  • Histone methylation
  • Oxidative stress
Dynamic and flexible H3K9me3 bridging via HP1β dimerization establishes a plastic state of condensed chromatin
Year: 2016
Authors: Hiragami-Hamada K., Soeroes S., Nikolov M., Wilkins B., Kreuz S., Chen C., De La Rosa-Velázquez IA, Zenn HM, Kost N., Pohl W., Chernev A., Schwarzer D., Jenuwein T., Lorincz M., Zimmermann B., Walla PJ., Neumann H., Baubec T., Urlaub H., Fischle W.
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Modulations of DNA Contacts by Linker Histones and Post-translational Modifications Determine the Mobility and Modifiability of Nucleosomal H3 Tails
Year: 2016
Authors: Stützer A., Liokatis S., Kiesel A., Schwarzer D., Sprangers R., Söding J., Selenko P., Fischle W.
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A Multilaboratory Comparison of Calibration Accuracy and the Performance of External References in Analytical Ultracentrifugation
Year: 2015
Authors: Zhao H., … Fischle W., … And Schuck P. (52 Multiauthor Study)
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Conserved linker regions and their regulation determine multiple chromatin-binding modes of UHRF1
Year: 2015
Authors: Tauber M., Fischle W.
  • DNA methylation
  • UHRF1
  • Allosteric
  • Chromatin
  • Cooperative
  • Domains
  • Epigenetic
  • Histone
  • Modifications
  • Multiple protein conformations
  • Multivalent
The basal transcription complex component TAF3 transduces changes in nuclear PI into transcriptional regulation
Year: 2015
Authors: Stijf-Bultsma Y., Sommer L., Tauber M., Giardoglou P., Jones D.R., Gelato K.A., Baalbaki M., Hart D., Van Pelt J., Shah Z., Rahnamoun H., Toma C., Lauberth S.M., Haramis A.-P., Fischle W., Divecha N.
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Chromatin chemistry goes cellular
Year: 2015
Authors: Fischle W., Schwarzer D., Mootz, H.D.
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Histone H3 Serine 28 is essential for efficient Polycomb-mediated gene repression in Drosophila
Year: 2015
Authors: Yung P.Y.K., Stützer A., Fischle W., Martinez A.-M., Cavalli G.
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Multimerization of Drosophila sperm protein Mst77F causes a unique condensed chromatin structure
Year: 2015
Authors: Kost N., Kaiser S., Ostwal Y., Riedel D., Stützer A., Nikolov M., Rathke C., Renkawitz-Pohl R., Fischle W.
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Synthetic histone code
Year: 2015
Authors: Fischle W., Mootz, H.D., Schwarzer D.
  • Chromatin
RNAs – physical and functional modulators of chromatin reader proteins
Year: 2014
Authors: Hiragami-Hamada K., Fischle W.
  • Chromodomain protein
  • Epigenetics
  • Histone modification
  • Nascent transcript
  • Non-coding RNA
Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity
Year: 2014
Authors: Ferrari K.J., Scelfo A., Jammula S., Cuomo A., Barozzi I., Stützer A., Fischle W., Bonaldi T., Pasini D.
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A cascade of histone modifications induces chromatin condensation in mitosis
Year: 2014
Authors: Wilkins B.J., Rall N.A., Ostwal Y., Kruitwagen T., Hiragami-Hamada K., Winkler M., Barral Y., Fischle W., Neumann H.
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Characterization of the effects of phosphorylation by CK2 on the structure and binding properties of human HP1β
Year: 2014
Authors: Munari F., Gajda M.J., Hiragami-Hamada K., Fischle W., Zweckstetter M.
  • Chromo domain
  • Chromoshadow
  • Heterochromatin Protein 1
  • NMR
  • Phosphorylation
  • Structure
Molecular mechanisms of histone modification function
Year: 2014
Authors: Fischle W.
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A chromatin-dependent role of the fragile X mental retardation protein, FMRP, in the DNA damage response
Year: 2014
Authors: Alpatov R., Lesch B.J., Kinoshita M., Stützer A., Armache K.J., Simon M.D., Wang A., Vakoc C.R., Kingston R.E., Fischle W., Page D.C., Warren S.T., Shi Y.
Accessibility of different histone H3-binding domains of UHRF1 is allosterically regulated by phosphatidylinositol 5-phosphate
Year: 2014
Authors: Gelato K.A., Tauber M., Ong M., Winter S., Hiragami-Hamada K., Sindlinger J., Lemak A., Bultsma Y., Houliston S., Schwarzer D., Divecha N., Arrowsmith C.H., Fischle W.
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N-terminal phosphorylation of HP1α increases its nucleosome-binding specificity
Year: 2014
Authors: Nishibuchi G., Machida S., Osakabe A., Murakoshi H., Hiragami-Hamada K., Nakagawa R., Fischle W., Nishimura Y., Kurumizaka H., Tagami H., Nakayama J.
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Analysis of Phosphorylation-Dependent Protein-Protein Interactions of Histone H3
Year: 2014
Authors: Klingberg R., Jost J.O., Schümann M., Gelato K.A., Fischle W., Krause E., Schwarzer D.
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Structural plasticity in human heterochromatin protein 1β
Year: 2013
Authors: Munari F., Rezaei-Ghaleh N., Xiang S., Becker S., Fischle W., Zweckstetter M.
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Mitochondrial SIRT4-type proteins in C. elegans and mammals interact with pyruvate carboxylase and other acetylated biotin-dependent carboxylases
Year: 2013
Authors: Wirth M., Karaca S., Wenzel D., Ho L., Tishkoff D., Lombard D.B., Verdin E., Urlaub H., Jedrusik-Bode M., Fischle W.
  • Biotin-dependent carboxylase
  • C. elegans
  • Protein acetylation
  • Pyruvate carboxylase
  • SIRT4
  • Sirtuins
Systematic identification of proteins binding to chromatin-embedded ubiquitylated H2B reveals recruitment of SWI/SNF to regulate transcription
Year: 2013
Authors: Shema-Yaacoby E., Nikolov M., Haj-Yahya M., Siman P., Allemand E., Yamaguchi Y., Muchardt C., Urlaub H., Brik A., Oren M., Fischle W.
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Convergent chemical synthesis of histone H2B protein for the site-specific ubiquitination at Lys34.
Year: 2013
Authors: Siman P., Karthikeyan S.V., Nikolov M., Fischle W., Brik A.
  • H2B protein
  • Chromatin
  • Peptide ligation
  • Proteins
  • Ubiquitination
A stable transcription factor complex nucleated by oligomeric AML1-ETO controls leukaemogenesis
Year: 2013
Authors: Sun X.-J., Wang Z., Wang L., Jiang Y., Kost N., Soong T.D., Chen W.-Y., Tang Z., Nakadai T., Elemento O., Fischle W., Melnick A., Patel D.J., Nimer S.D., Roeder R.G.
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Probing the acetylation code of histone H4
Year: 2013
Authors: Lang D., Schümann M., Gelato K., Fischle W., Schwarzer D., Krause E.
  • Cell biology
  • Chromatin
  • Histone acetylation
  • Interactome analysis
  • Quantitative mass spectrometry
  • SILAC
Quantitative Assessment of Protein Interaction with Methyl-Lysine Analogues by Hybrid Computational and Experimental Approaches
Year: 2012
Authors: Seeliger D., Soeroes S., Klingberg R., Schwarzer D., Grubmüller H., Fischle W.
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Systematic analysis of histone modification readout
Year: 2012
Authors: Nikolov M., Fischle W.
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One, two, three – how histone methylation is read
Year: 2012
Authors: Fischle W.
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Asymmetrically modified nucleosomes expand the histone code
Year: 2012
Authors: Van Rossum B., Fischle W., Selenko P.
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HP1 forms distinct complexes to direct histone deacetylation and DNA methylation
Year: 2012
Authors: Honda S., Lewis Z.A., Shimada K., Fischle W., Sack R., Selker E.U.
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Phosphorylation of histone H3 Serine 10 establishes a hierarchy for subsequent intramolecular modification events
Year: 2012
Authors: Liokatis S., Stützer A., Elsässer S.J., Theillet F.-X., Klingberg R., Van Rossum B., Schwarzer D., Allis C.D., Fischle W., Selenko P.
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Methylation of K9 in histone H3 directs alternative modes of highly dynamic interaction of heterochromatin protein hHP1β with the nucleosome
Year: 2012
Authors: Munari F., Soeroes S., Zenn H.M., Schomburg A., Kost N., Schroeder S., Klingberg R., Rezaei-Ghaleh N., Stuetzer A., Gelato K.A., Walla P.J., Becker S., Schwarzer D., Zimmermann B., Fischle W., Zweckstetter M.
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HP1 recruits activity-dependent neuroprotective protein to H3K9me3 marked pericentromeric heterochromatin for silencing of major satellite repeats
Year: 2011
Authors: Mosch K., Franz H., Soeroes S., Singh P.B., Fischle W.
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H3K9me2/3 Binding of the MBT Domain Protein LIN-61 Is Essential for Caenorhabditis elegans Vulva Development
Year: 2011
Authors: Koester-Eiserfunke N., Fischle W.
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Molecular epigenetics: connecting human biology and disease with little marks
Year: 2011
Authors: Jeltsch A., Fischle W.
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Histone Methylation by PRC2 Is Inhibited by Active Chromatin Marks
Year: 2011
Authors: Schmitges F.W., Prusty A.B., Faty M., Stuetzer A., Lingaraju G.M., Aiwazian J., Sack R., Hess D., Li L., Zhou S., Bunker R.D., Wirth U., Bouwmeester T., Bauer A., Ly-Hartig N., Zhao K., Chan H., Gu J., Gut H., Fischle W., Mueller J., Thoma N.H.
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A dual role of H4K16 acetylation in the establishment of yeast silent chromatin
Year: 2011
Authors: Oppikofer M., Kueng S., Martino F. Soeroes S., Hancock S.M., Chin J.W., Fischle W., Gasser S.M.
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Chromatin Affinity Purification and Quantitative Mass Spectrometry Defining the Interactome of Histone Modification Patterns
Year: 2011
Authors: Nikolov M., Stützer A., Mosch K., Krasauskas A., Soeroes S., Stark H., Urlaub H., Fischle W.
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Chromatin regulated interchange between PRC2-Ezh2 and PRC2-Ezh1 complexes controls Myogenin activation in skeletal muscle cells
Year: 2011
Authors: Stojic L., Jasencakova Z., Prezioso C., Stützer A., Bodega B., Pasini D., Klingberg R., Mozzetta C., Margueron R., Puri P.L., Schwarzer D., Helin K, Fischle W., Orlando V.
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The Molecular Architecture of the Human Prp19/CDC5L Complex
Year: 2010
Authors: Grote M., Wolf E., Will C.L., Lemm I., Agafonov D.E., Schomburg A., Fischle W., Urlaub H., Lührmann R.
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DNA methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail
Year: 2010
Authors: Zhang Y., Jurkowska R., Soeroes S., Rajavelu A., Dhayalan A., Bock I., Rathert P., Brandt O., Reinhardt R., Fischle W., Jeltsch A.
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Epigenetic markers and their cross-talk
Year: 2010
Authors: Winter S., Fischle W.
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TRIM24 links recognition of a non-canonical histone signature to breast cancer
Year: 2010
Authors: Tsai W.-W., Wang Z., Yiu T.T., Akdemir K.C., Xia W., Winter S., Tsai C.-Y., Shi X., Schwarzer D., Plunkett W., Aronow B., Gozani O., Fischle W., Hung M.-C., Patel D.J., Barton M.C.
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Linker histone HIS-24 and SIR-2.1 deacetylase induce H3K27me3 in C. elegans germline
Year: 2009
Authors: Wirth M., Paap F., Fischle W., Wenzel D., Agafonov D.E., Samatov T.R., Wisniewski J.R., Jedrusik-Bode M.
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Tip60-ing the balance in DSB repair
Year: 2009
Authors: Fischle W.
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Multimerization and H3K9me3 binding is required for CDYL1b heterochromatin association
Year: 2009
Authors: Franz H., Mosch K., Soeroes S., Urlaub H., Fischle W.
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Roles of the Clr4 methyltransferase complex in nucleation, spreading and maintenance of heterochromatin
Year: 2008
Authors: Zhang K., Mosch K., Fischle W., Grewal S.I.
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14-3-3 Proteins recognize a histone code at histone H3 and are required for transcriptional activation
Year: 2008
Authors: Winter S., Simboeck E., Fischle W., Zupkovitz G., Dohnal I., Mechtler K., Ammerer G., Seiser C.
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Talk is cheap-cross-talk in establishment, maintenance, and readout of chromatin modifications
Year: 2008
Authors: Fischle W.
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Histone H4 lysine 20 monomethylation promotes transcriptional repression by L3MBTL1
Year: 2008
Authors: Kalakonda N., Fischle W., Boccuni P., Gurvich N., Hoya-Arias R., Zhao X., Miyata Y., Magrogan D., Zhang J., Sims J.K., Rice J.C., Nimer S.D.
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Modulation of 14-3-3 interaction with phosphorylated histone H3 by combinatorial modification patterns
Year: 2008
Authors: Winter S., Fischle W., Seiser C.
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Specificity of the chromodomain Y chromosome family of chromodomains for lysine-methylated ARK(S/T) motifs
Year: 2008
Authors: Fischle W., Franz H., Jacobs S.A., Allis C.D., Khorasanizadeh S.
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Role of histone modifications in defining chromatin structure and function
Year: 2008
Authors: Gelato K.A., Fischle W.
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Structural basis for lower lysine methylation state-specific readout by MBT repeats of L3MBTL1 and an engineered PHD finger
Year: 2007
Authors: Li H., Fischle W., Wang W., Duncan W.M., Liang L., Murakami-Ishibe S., Allis C.D., Patel D.J.
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Structural and functional analyses of methyl-lysine binding by the malignant brain tumour repeat protein Sex comb on midleg
Year: 2007
Authors: Grimm C., De Ayala Alonso A.G., Rybin V., Steuerwald U., Ly-Hartig N., Fischle W., Mueller J., Mueller C.W.
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Dynamic regulation of effector protein binding to histone modifications: The biology of HP1 switching
Year: 2006
Authors: Dormann H.L., Tseng B.S., Allis C.D., Funabiki H., Fischle W.
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Polycomb group protein complex with sequence-specific DNA-binding and selective methyl-lysine-binding activities
Year: 2006
Authors: Klymenko T., Papp B., Fischle W., Kocher T., Schelder M., Fritsch C., Wild B., Wilm M., Mueller J.
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The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast
Year: 2005
Authors: Yamada T., Fischle W., Sugiyama T., Allis C.D., Grewal S.I.
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In nucleo enzymatic assays for the identification and characterization of histone modifying activities
Year: 2005
Authors: Fischle W.
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Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation
Year: 2005
Authors: Fischle W., Tseng B.S., Dormann H.L., Ueberheide B.M., Garcia B.A., Shabanowitz J., Hunt D.F., Funabiki H., Allis C.D.
Measurement of mammalian histone deacetylase activity
Year: 2004
Authors: Verdin E., Dequiedt F., Fischle W., Frye R., Marshall B., North B.
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Assays for structure and dynamics of chromodomain interactions with histone peptides
Year: 2004
Authors: Jacobs S.A., Fischle W., Khorasanizadeh S.
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Beyond the double helix: Writing and reading the histone code
Year: 2004
Authors: Wang Y., Fischle W., Cheung W., Jacobs S.A., Khorasanizadeh S., Allis C.D.
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Binary switches and modification cassettes in histone biology and beyond
Year: 2003
Authors: Fischle W., Wang Y., Allis C.D.
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Regulation of Nur77 transcription by HDAC7, a thymus-specific histone deacetylase
Year: 2003
Authors: Dequiedt F., Kasler H., Fischle W., Kiermer V., Weinstein M., Herndier B., Verdin E.
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Histone and chromatin cross-talk
Year: 2003
Authors: Fischle W., Wang Y., Allis C.D.
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Molecular basis for the discrimination of repressive methyl-lysine marks in histone H3 by Polycomb and HP1 chromodomains
Year: 2003
Authors: Fischle W., Wang Y., Jacobs S.A., Kim Y., Allis C.D., Khorasanizadeh S.
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Enzymatic activity associated with class II HDACs is dependent on a multiprotein complex containing HDAC3 and SMRT/N-CoR
Year: 2002
Authors: Fischle W., Dequiedt F., Hendzel M., Guenther M.G., Lazar M.A., Voelter W., Verdin E.
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Control of cytomegalovirus lytic gene expression by histone acetylation
Year: 2002
Authors: Murphy J.C., Fischle W., Verdin E., Sinclair J.H
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Human HDAC7 histone deacetylase activity is associated with HDAC3 in vivo
Year: 2001
Authors: Fischle W., Dequiedt F., Fillion M., Hendzel M.J., Voelter W., Verdin E.
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The emerging role of class II histone deacetylases
Year: 2001
Authors: Fischle W., Kiermer V., Dequiedt F., Verdin E.
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Regulation of global acetylation in mitosis through loss of histone acetyltransferases and deacetylases from chromatin
Year: 2001
Authors: Kruhlak M.J., Hendzel M.J., Fischle W., Bertos N.R., Hameed S., Yang X.J., Verdin E., Bazett-Jones D.P.
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Duration of nuclear NF-kappaB action regulated by reversible acetylation
Year: 2001
Authors: Chen Lf, Fischle W., Verdin E., Greene W.C.
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Identification of a penta- and hexapeptide of islet amyloid polypeptide (IAPP) with amyloidogenic and cytotoxic properties
Year: 2000
Authors: Tenidis K., Waldner M., Bernhagen J., Fischle W., Bergmann M., Weber M., Merkle M.L., Voelter W., Brunner H., Kapurniotu A.
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Histone deacetylase 3 and a WD40 repeat protein linked to deafness are components of a core SMRT corepressor complex
Year: 2000
Authors: Guenther M.G., Lane W.S., Fischle W., Verdin E., Lazar M.A., Shiekhattar R.
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BCoR, a novel co-repressor involved in BCL-6 repression
Year: 2000
Authors: Huynh K.D., Fischle W., Verdin E., Bardwell V.J.
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Reduced Mobility of the Alternate Splicing Factor (Asf) through the Nucleoplasm and Steady State Speckle Compartments
Year: 2000
Authors: Kruhlak M.J., Levert M.A., Fischle W., Verdin E., Bazett-Jones D.P., Hendzel M.J.
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A new family of human histone deacetylases related to Saccharomyces cerevisiae, HDA1p
Year: 1999
Authors: Fischle W., Emiliani S., Hendzel M.J., Nagase T., Nomura N., Voelter W., Verdin E.
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Acetylation of the HIV-1 Tat protein by p300 is important for its transcriptional activity
Year: 1999
Authors: Ott M., Schnolzer M., Garnica J., Fischle W., Emiliani S., Rackwitz H.-R., Verdin E.
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A point mutation in the HIV-1 tat responsive element is associated with postintegration latency
Year: 1998
Authors: Emiliani S., Van Lint C., Fischle W., Paras Jr. P., Ott M., Brady J., Verdin E.
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Mutations in the tat gene are responsible for human immunodeficiency virus type 1 postintegration latency in the U1 cell line
Year: 1998
Authors: Emiliani S., Fischle W., Ott M., Van Lint C., Amella C.A., Verdin E.
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Characterization of a human RPD3 ortholog, HDAC3
Year: 1998
Authors: Emiliani S., Fischle W., Van Lint C., Al-Abed Y., Verdin E.
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